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1

Deep learning and process understanding for data-driven Earth system science

Reichstein, Markus, Camps-Valls, Gustau, Stevens, Bjorn, Jung, Martin, Denzler, Joachim, Carvalhais, Nuno, Prabhat,

Journal:

Year:

2019

Language:

english

File:

PDF, 2.50 MB

english, 2019

2

Unexpectedly large impact of forest management and grazing on global vegetation biomass

Erb, Karl-Heinz, Kastner, Thomas, Plutzar, Christoph, Bais, Anna Liza S., Carvalhais, Nuno, Fetzel, Tamara, Gingrich, Simone, Haberl, Helmut, Lauk, Christian, Niedertscheider, Maria, Pongratz, Julia,

Journal:

Year:

2017

Language:

english

File:

PDF, 12.60 MB

english, 2017

3

Codominant water control on global interannual variability and trends in land surface phenology and greenness

Forkel, Matthias, Migliavacca, Mirco, Thonicke, Kirsten, Reichstein, Markus, Schaphoff, Sibyll, Weber, Ulrich, Carvalhais, Nuno

Journal:

Global Change Biology

Year:

2015

Language:

english

File:

PDF, 1.21 MB

english, 2015

4

[IEEE IGARSS 2018 - 2018 IEEE International Geoscience and Remote Sensing Symposium - Valencia, Spain (2018.7.22-2018.7.27)] IGARSS 2018 - 2018 IEEE International Geoscience and Remote Sensing Symposium - Modelling Landsurface Time-Series with Recurrent Neural Nets

Reichstein, Markus, Besnard, Simon, Carvalhais, Nuno, Gans, Fabian, Jung, Martin, Kraft, Basil, Mahecha, Miguel

Year:

2018

Language:

english

File:

PDF, 378 KB

english, 2018

5

The importance of radiation for semiempirical water-use efficiency models

Boese, Sven, Jung, Martin, Carvalhais, Nuno, Reichstein, Markus

Journal:

Year:

2017

Language:

english

File:

PDF, 7.60 MB

english, 2017

6

Deep learning and process understanding for data-driven Earth system science

Reichstein, Markus, Camps-Valls, Gustau, Stevens, Bjorn, Jung, Martin, Denzler, Joachim, Carvalhais, Nuno, Prabhat,

Journal:

Year:

2019

File:

PDF, 2.50 MB

2019

7

Identification of vegetation and soil carbon pools out of equilibrium in a process model via eddy covariance and biometric constraints

NUNO CARVALHAIS, MARKUS REICHSTEIN, PHILIPPE CIAIS, G. JAMES COLLATZ, MIGUEL D. MAHECHA, LEONARDO MONTAGNANI, DARIO PAPALE, SERGE RAMBAL, JÚLIA SEIXAS

Journal:

Global Change Biology

Year:

2010

Language:

english

File:

PDF, 509 KB

english, 2010

8

Semiempirical modeling of abiotic and biotic factors controlling ecosystem respiration across eddy covariance sites

MIRCO MIGLIAVACCA, MARKUS REICHSTEIN, ANDREW D. RICHARDSON, ROBERTO COLOMBO, MARK A. SUTTON, GITTA LASSLOP, ENRICO TOMELLERI, GEORG WOHLFAHRT, NUNO CARVALHAIS, ALESSANDRO CESCATTI, MIGUEL D. MAHECHA,

Journal:

Global Change Biology

Year:

2011

Language:

english

File:

PDF, 483 KB

english, 2011

9

Evaluating the MEFIDIS model for runoff and soil erosion prediction during rainfall events

João Pedro Nunes, Gonçalo Nuno Vieira, Júlia Seixas, Pedro Gonçalves, Nuno Carvalhais

Journal:

Year:

2005

Language:

english

File:

PDF, 473 KB

english, 2005

10

Implications of the carbon cycle steady state assumption for biogeochemical modeling performance and inverse parameter retrieval

Carvalhais, Nuno, Reichstein, Markus, Seixas, Júlia, Collatz, G. James, Pereira, João Santos, Berbigier, Paul, Carrara, Arnaud, Granier, André, Montagnani, Leonardo, Papale, Dario, Rambal, Serge, Sanz

Journal:

Global Biogeochemical Cycles

Year:

2008

Language:

english

File:

PDF, 1005 KB

english, 2008

11

Dormancy withinStaphylococcus epidermidisbiofilms: a transcriptomic analysis by RNA-seq

Carvalhais, Virginia, França, Angela, Cerca, Filipe, Vitorino, Rui, Pier, Gerald B., Vilanova, Manuel, Cerca, Nuno

Journal:

Applied Microbiology and Biotechnology

Year:

2014

Language:

english

File:

PDF, 645 KB

english, 2014

12

Controlled RNA contamination and degradation and its impact on qPCR gene expression in S. epidermidis biofilms

Carvalhais, Virginia, Delgado-Rastrollo, Maria, Melo, Luís D.R., Cerca, Nuno

Journal:

Journal of Microbiological Methods

Year:

2013

Language:

english

File:

PDF, 643 KB

english, 2013

13

Alterations in the Staphylococcus epidermidis biofilm transcriptome following interaction with whole human blood

França, Angela, Carvalhais, Virgínia, Maira-Litrán, Tomás, Vilanova, Manuel, Cerca, Nuno, Pier, Gerald

Journal:

Pathogens and Disease

Year:

2014

Language:

english

File:

PDF, 191 KB

english, 2014

14

Global covariation of carbon turnover times with climate in terrestrial ecosystems

Carvalhais, Nuno, Forkel, Matthias, Khomik, Myroslava, Bellarby, Jessica, Jung, Martin, Migliavacca, Mirco, Μu, Mingquan, Saatchi, Sassan, Santoro, Maurizio, Thurner, Martin, Weber, Ulrich, Ahrens, Be

Journal:

Year:

2014

Language:

english

File:

PDF, 4.79 MB

english, 2014

15

Time variable hydraulic parameters improve the performance of a mechanistic stand transpiration model. A case study of Mediterranean Scots pine sap flow data assimilation

Sus, Oliver, Poyatos, Rafael, Barba, Josep, Carvalhais, Nuno, Llorens, Pilar, Williams, Mathew, Vilalta, Jordi Martínez

Journal:

Agricultural and Forest Meteorology

Year:

2014

Language:

english

File:

PDF, 2.88 MB

english, 2014

16

Comparative proteomic and transcriptomic profile of Staphylococcus epidermidis biofilms grown in glucose-enriched medium

Carvalhais, Virginia, França, Angela, Pier, Gerald B., Vilanova, Manuel, Cerca, Nuno, Vitorino, Rui

Journal:

Year:

2015

Language:

english

File:

PDF, 1.61 MB

english, 2015

17

Carbon stock and density of northern boreal and temperate forests

Thurner, Martin, Beer, Christian, Santoro, Maurizio, Carvalhais, Nuno, Wutzler, Thomas, Schepaschenko, Dmitry, Shvidenko, Anatoly, Kompter, Elisabeth, Ahrens, Bernhard, Levick, Shaun R., Schmullius, C

Journal:

Global Ecology and Biogeography

Year:

2014

Language:

english

File:

PDF, 1.10 MB

english, 2014

18

Proteomic profile of dormancy withinStaphylococcus epidermidisbiofilms using iTRAQ and label-free strategies

Carvalhais, Virginia, Cerca, Nuno, Vilanova, Manuel, Vitorino, Rui

Journal:

Applied Microbiology and Biotechnology

Year:

2015

Language:

english

File:

PDF, 846 KB

english, 2015

19

An immunoproteomic approach for characterization of dormancy within Staphylococcus epidermidis biofilms

Carvalhais, Virginia, Cerveira, Frederico, Vilanova, Manuel, Cerca, Nuno, Vitorino, Rui

Journal:

Molecular Immunology

Year:

2015

Language:

english

File:

PDF, 1.15 MB

english, 2015

20

Immunoreactive pattern of Staphylococcus epidermidis biofilm against human whole saliva

Carvalhais, Virginia, Amado, Francisco, Cerveira, Frederico, Ferreira, Rita, Vilanova, Manuel, Cerca, Nuno, Vitorino, Rui

Journal:

ELECTROPHORESIS

Year:

2015

Language:

english

File:

PDF, 574 KB

english, 2015

21

Harmonized European Long-Term Climate Data for Assessing the Effect of Changing Temporal Variability on Land–Atmosphere CO 2 Fluxes*

Beer, Christian, Weber, Ulrich, Tomelleri, Enrico, Carvalhais, Nuno, Mahecha, Miguel, Reichstein, Markus

Journal:

Journal of Climate

Year:

2014

Language:

english

File:

PDF, 4.43 MB

english, 2014

22

Proteome signatures—how are they obtained and what do they teach us?

da Costa, João Pinto, Carvalhais, Virginia, Ferreira, Rita, Amado, Francisco, Vilanova, Manuel, Cerca, Nuno, Vitorino, Rui

Journal:

Applied Microbiology and Biotechnology

Year:

2015

Language:

english

File:

PDF, 651 KB

english, 2015

23

Characterization of an in vitro fed-batch model to obtain cells released from S. epidermidis biofilms

França, Angela, Carvalhais, Virgínia, Vilanova, Manuel, Pier, Gerald B., Cerca, Nuno

Journal:

Year:

2016

Language:

english

File:

PDF, 1.56 MB

english, 2016

24

Toward more realistic projections of soil carbon dynamics by Earth system models

Luo, Yiqi, Ahlström, Anders, Allison, Steven D., Batjes, Niels H., Brovkin, Victor, Carvalhais, Nuno, Chappell, Adrian, Ciais, Philippe, Davidson, Eric A., Finzi, Adien, Georgiou, Katerina, Guenet, Be

Journal:

Global Biogeochemical Cycles

Year:

2016

Language:

english

File:

PDF, 1.87 MB

english, 2016

25

Climate change impacts on the vegetation carbon cycle of the Iberian Peninsula-Intercomparison of CMIP5 results

Aparício, Sara, Carvalhais, Nuno, Seixas, Júlia

Journal:

Journal of Geophysical Research: Biogeosciences

Year:

2015

Language:

english

File:

PDF, 11.03 MB

english, 2015

26

Large-scale variation in boreal and temperate forest carbon turnover rate related to climate

Thurner, Martin, Beer, Christian, Carvalhais, Nuno, Forkel, Matthias, Santoro, Maurizio, Tum, Markus, Schmullius, Christiane

Journal:

Geophysical Research Letters

Year:

2016

Language:

english

File:

PDF, 1.52 MB

english, 2016

27

Effect of spatial sampling from European flux towers for estimating carbon and water fluxes with artificial neural networks

Papale, Dario, Black, T. Andrew, Carvalhais, Nuno, Cescatti, Alessandro, Chen, Jiquan, Jung, Martin, Kiely, Gerard, Lasslop, Gitta, Mahecha, Miguel D., Margolis, Hank, Merbold, Lutz, Montagnani, Leona

Journal:

Journal of Geophysical Research: Biogeosciences

Year:

2015

Language:

english

File:

PDF, 1.76 MB

english, 2015

28

Bimodal fire regimes unveil a global-scale anthropogenic fingerprint

Benali, Akli, Mota, Bernardo, Carvalhais, Nuno, Oom, Duarte, Miller, Lee M., Campagnolo, Manuel L., Pereira, José M. C.

Journal:

Global Ecology and Biogeography

Year:

2017

Language:

english

File:

PDF, 1.47 MB

english, 2017

29

Coverage of high biomass forests by the ESA BIOMASS mission under defense restrictions

Carreiras, João M.B., Quegan, Shaun, Le Toan, Thuy, Ho Tong Minh, Dinh, Saatchi, Sassan S., Carvalhais, Nuno, Reichstein, Markus, Scipal, Klaus

Journal:

Remote Sensing of Environment

Year:

2017

Language:

english

File:

PDF, 1.19 MB

english, 2017

30

Tetracycline and rifampicin induced a viable but nonculturable state in Staphylococcus epidermidis biofilms

Carvalhais, Virginia, Pérez-Cabezas, Begoña, Oliveira, Cátia, Vitorino, Rui, Vilanova, Manuel, Cerca, Nuno

Journal:

Future Microbiology

Year:

2018

Language:

english

File:

PDF, 1.95 MB

english, 2018

31

An Automated Approach to Map the History of Forest Disturbance from Insect Mortality and Harvest with Landsat Time-Series Data

Neigh, Christopher, Bolton, Douglas, Diabate, Mouhamad, Williams, Jennifer, Carvalhais, Nuno

Journal:

Year:

2014

Language:

english

File:

PDF, 1.75 MB

english, 2014

32

Water-stress-induced breakdown of carbon–water relations: indicators from diurnal FLUXNET patterns

Nelson, Jacob A., Carvalhais, Nuno, Migliavacca, Mirco, Reichstein, Markus, Jung, Martin

Journal:

Year:

2018

Language:

english

File:

PDF, 2.59 MB

english, 2018

33

Trend Change Detection in NDVI Time Series: Effects of Inter-Annual Variability and Methodology

Forkel, Matthias, Carvalhais, Nuno, Verbesselt, Jan, Mahecha, Miguel, Neigh, Christopher, Reichstein, Markus

Journal:

Year:

2013

Language:

english

File:

PDF, 3.16 MB

english, 2013

34

Reviews and syntheses: An empirical spatiotemporal description of the global surface–atmosphere carbon fluxes: opportunities and data limitations

Zscheischler, Jakob, Mahecha, Miguel D., Avitabile, Valerio, Calle, Leonardo, Carvalhais, Nuno, Ciais, Philippe, Gans, Fabian, Gruber, Nicolas, Hartmann, Jens, Herold, Martin, Ichii, Kazuhito, Jung, M

Journal:

Year:

2017

Language:

english

File:

PDF, 1.75 MB

english, 2017

35

Quantifying the effect of forest age in annual net forest carbon balance

Besnard, Simon, Carvalhais, Nuno, Arain, Altaf, Black, Andrew, de Bruin, Sytze, Buchmann, Nina, Cescatti, Alessandro, Chen, Jiquan, Clevers, Jan G P W, Desai, Ankur R, Gough, Chris, Havrankova, Kateri

Journal:

Environmental Research Letters

Year:

2018

Language:

english

File:

PDF, 632 KB

english, 2018

36

Understanding terrestrial water storage variations in northern latitudes across scales

Trautmann, Tina, Koirala, Sujan, Carvalhais, Nuno, Eicker, Annette, Fink, Manfred, Niemann, Christoph, Jung, Martin

Journal:

Hydrology and Earth System Sciences

Year:

2018

Language:

english

File:

PDF, 6.37 MB

english, 2018

37

[IEEE IGARSS 2018 - 2018 IEEE International Geoscience and Remote Sensing Symposium - Valencia (2018.7.22-2018.7.27)] IGARSS 2018 - 2018 IEEE International Geoscience and Remote Sensing Symposium - Assessing the Use of Multiple Constraints and Ancillary Data to Support Scope Model Inversion in a Experimental Grassland

Pacheco-Labrador, Javier, Carvalhais, Nuno, Perez-Priego, Oscar, El-Madany, Tarek S., Rossini, Micol, Julitta, Tommaso, Moreno, Gerardo, Gonzalez-Cascon, Rosario, Martin, M. Pilar, Reichstein, Markus,

Year:

2018

Language:

english

File:

PDF, 298 KB

english, 2018

38

Coupling Water and Carbon Fluxes to Constrain Estimates of Transpiration: The TEA Algorithm

Nelson, Jacob A., Carvalhais, Nuno, Cuntz, Matthias, Delpierre, Nicolas, Knauer, Jürgen, Ogée, Jérome, Migliavacca, Mirco, Reichstein, Markus, Jung, Martin

Journal:

Journal of Geophysical Research: Biogeosciences

Year:

2018

Language:

english

File:

PDF, 3.53 MB

english, 2018

39

Understanding the Land Carbon Cycle with Space Data: Current Status and Prospects

Exbrayat, Jean-François, Bloom, A. Anthony, Carvalhais, Nuno, Fischer, Rico, Huth, Andreas, MacBean, Natasha, Williams, Mathew

Journal:

Surveys in Geophysics

Year:

2019

Language:

english

File:

PDF, 2.46 MB

english, 2019

40

Constraining a land-surface model with multiple observations by application of the MPI-Carbon Cycle Data Assimilation System V1.0

Schürmann, Gregor J., Kaminski, Thomas, Köstler, Christoph, Carvalhais, Nuno, Voßbeck, Michael, Kattge, Jens, Giering, Ralf, Rödenbeck, Christian, Heimann, Martin, Zaehle, Sönke

Journal:

Geoscientific Model Development

Year:

2016

Language:

english

File:

PDF, 3.03 MB

english, 2016

41

Aspects of Forest Biomass in the Earth System: Its Role and Major Unknowns

Reichstein, Markus, Carvalhais, Nuno

Journal:

Surveys in Geophysics

Year:

2019

Language:

english

File:

PDF, 1.21 MB

english, 2019

42

Multiple-constraint inversion of SCOPE. Evaluating the potential of GPP and SIF for the retrieval of plant functional traits

Pacheco-Labrador, Javier, Perez-Priego, Oscar, El-Madany, Tarek S., Julitta, Tommaso, Rossini, Micol, Guan, Jinhong, Moreno, Gerardo, Carvalhais, Nuno, Martín, M. Pilar, Gonzalez-Cascon, Rosario, Koll

Journal:

Remote Sensing of Environment

Year:

2019

Language:

english

File:

PDF, 4.88 MB

english, 2019

43

Reverse engineering model structures for soil and ecosystem respiration: the potential of gene expression programming

Ilie, Iulia, Dittrich, Peter, Carvalhais, Nuno, Jung, Martin, Heinemeyer, Andreas, Migliavacca, Mirco, Morison, James I. L., Sippel, Sebastian, Subke, Jens-Arne, Wilkinson, Matthew, Mahecha, Miguel D.

Journal:

Geoscientific Model Development

Year:

2017

Language:

english

File:

PDF, 9.77 MB

english, 2017

44

Land-use and land-cover change carbon emissions between 1901 and 2012 constrained by biomass observations

Li, Wei, Ciais, Philippe, Peng, Shushi, Yue, Chao, Wang, Yilong, Thurner, Martin, Saatchi, Sassan S., Arneth, Almut, Avitabile, Valerio, Carvalhais, Nuno, Harper, Anna B., Kato, Etsushi, Koven, Charle

Journal:

Year:

2017

Language:

english

File:

PDF, 1.13 MB

english, 2017

45

Reverse engineering model structures for soil and ecosystem respiration: the potential of gene expression programming

Ilie, Iulia, Dittrich, Peter, Carvalhais, Nuno, Jung, Martin, Heinemeyer, Andreas, Migliavacca, Mirco, Morison, James I. L., Sippel, Sebastian, Subke, Jens-Arne, Wilkinson, Matthew, Mahecha, Miguel D.

Journal:

Geoscientific Model Development

Year:

2017

File:

PDF, 9.77 MB

2017

46

Constraining modelled global vegetation dynamics and carbon turnover using multiple satellite observations

Forkel, Matthias, Drüke, Markus, Thurner, Martin, Dorigo, Wouter, Schaphoff, Sibyll, Thonicke, Kirsten, von Bloh, Werner, Carvalhais, Nuno

Journal:

Scientific Reports

Year:

2019

File:

PDF, 4.42 MB

2019

47

Land-use and land-cover change carbon emissions between 1901 and 2012 constrained by biomass observations

Li, Wei, Ciais, Philippe, Peng, Shushi, Yue, Chao, Wang, Yilong, Thurner, Martin, Saatchi, Sassan S., Arneth, Almut, Avitabile, Valerio, Carvalhais, Nuno, Harper, Anna B., Kato, Etsushi, Koven, Charle

Journal:

Year:

2017

File:

PDF, 1.13 MB

2017

48

Reply to Li et al.: Human societies began to play a significant role in global sediment transfer 4,000 years ago

Jenny, Jean-Philippe, Koirala, Sujan, Gregory-Eaves, Irene, Francus, Pierre, Ahrens, Bernhard, Brovkin, Victor, Ojala, Antti E. K., Zolitschka, Bernd, Bader, Juergen, Carvalhais, Nuno

Journal:

Proceedings of the National Academy of Sciences

Year:

2020

File:

PDF, 492 KB

2020

49

Towards a global understanding of vegetation&#8211;climate dynamics at multiple timescales

Linscheid, Nora, Estupinan-Suarez, Lina M., Brenning, Alexander, Carvalhais, Nuno, Cremer, Felix, Gans, Fabian, Rammig, Anja, Reichstein, Markus, Sierra, Carlos A., Mahecha, Miguel D.

Journal:

Year:

2020

File:

PDF, 5.70 MB

2020

50

Scaling carbon fluxes from eddy covariance sites to globe: synthesis and evaluation of the FLUXCOM approach

Jung, Martin, Schwalm, Christopher, Migliavacca, Mirco, Walther, Sophia, Camps-Valls, Gustau, Koirala, Sujan, Anthoni, Peter, Besnard, Simon, Bodesheim, Paul, Carvalhais, Nuno, Chevallier, FrÃ©dÃ©ric,

Journal:

Year:

2020

File:

PDF, 7.47 MB

2020

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